Theory of Computing ------------------- Title : Iterated Decomposition of Biased Permutations Via New Bounds on the Spectral Gap of Markov Chains Authors : Sarah Miracle, Amanda Pascoe Streib, and Noah Streib Volume : 21 Number : 3 Pages : 1-41 URL : https://theoryofcomputing.org/articles/v021a003 Abstract -------- In this paper, we address a conjecture of Fill (2003) about the spectral gap of a nearest-neighbor transposition Markov chain $M_{nn}$ over biased permutations of $[n]$. Suppose we are given an array of input probabilities $P = (p_{i,j})$ for all $1 \leq i, j \leq n$ with $p_{i,j} = 1-p_{j,i}$. The Markov chain $M_{nn}$ operates by uniformly choosing a pair of adjacent elements, $i$ and $j$, and putting $i$ ahead of $j$ with probability $p_{i,j}$ and $j$ ahead of $i$ with probability $p_{j,i}$, independent of their current ordering. We build on previous work of Miracle and Streib (LATIN'18 and _SIAM J. Discr. Math._ , 2024) that analyzed the spectral gap of $M_{nn}$ when the particles in $[n]$ fall into $k$ classes. There, the authors iteratively decomposed $M_{nn}$ into simpler chains, but incurred a multiplicative penalty of $n^{-2}$ for each application of the decomposition theorem of Martin and Randall (FOCS '00), leading to an exponentially small lower bound on the gap. We make progress by introducing a new complementary decomposition theorem. We introduce the notion of $\epsilon$-orthogonality, and show that for $\epsilon$-orthogonal chains, the complementary decomposition theorem may be iterated $O(1/\sqrt{\epsilon})$ times while only giving away a constant multiplicative factor on the overall spectral gap. We show that the decomposition given by Miracle and Streib ( _op. cit._ ) of a related Markov chain $M_{pp}$ over $k$-class particle systems is $\epsilon$-orthogonal for some $\epsilon\leq 1/n^2$ as long as the number of particles in each class is at least $C \log n$, where $C$ is a constant not depending on $n$. We then apply the complementary decomposition theorem iteratively $n$ times to prove nearly optimal bounds on the spectral gap of $M_{pp}$ and to further prove the first inverse-polynomial bound on the spectral gap of $M_{nn}$ when $k$ is as large as $\Theta(n/\log n)$. The previous best known bound assumed $k$ was bounded. ------------- A preliminary version of this paper appeared in the Proceedings of the 24th International Conference on Randomization and Computation (RANDOM'20).